mercurial.core package

Submodules

• mercurial.core.coupled_fields module
  • CoupledNeuralFields
    • CoupledNeuralFields.__init__()
    • CoupledNeuralFields.get_order_parameters()
    • CoupledNeuralFields.step()
• mercurial.core.dynamics module
  • evolve_pattern_trajectory()
  • free_energy_gradient()
  • pattern_evolution_with_persistence()
  • pattern_evolution_with_thermodynamics()
• mercurial.core.entanglement module
  • concurrence_mixed()
  • concurrence_pure()
  • logarithmic_negativity_covariance()
  • squeezed_state_concurrence()
• mercurial.core.entropy module
  • GeneralizedEntropy
    • GeneralizedEntropy.compute()
    • GeneralizedEntropy.from_pattern()
  • phenomenological_disorder()
  • shannon_entropy()
  • thermodynamic_entropy()
• mercurial.core.fdtd module
  • FDTD2D
    • FDTD2D.__init__()
    • FDTD2D.get_intensity()
    • FDTD2D.step()
• mercurial.core.hopf module
  • HopfNetwork
    • HopfNetwork.get_mean_amplitude()
    • HopfNetwork.get_order_parameter()
    • HopfNetwork.step()
  • HopfOscillator
    • HopfOscillator.derivative()
    • HopfOscillator.get_amplitude()
    • HopfOscillator.get_phase()
    • HopfOscillator.set_bifurcation()
    • HopfOscillator.step()
• mercurial.core.jansen_rit module
  • JansenRitColumn
    • JansenRitColumn.derivative()
    • JansenRitColumn.get_EEG()
    • JansenRitColumn.sigmoid()
    • JansenRitColumn.step()
  • JansenRitNetwork
    • JansenRitNetwork.get_EEG_array()
    • JansenRitNetwork.get_mean_EEG()
    • JansenRitNetwork.step()
• mercurial.core.kuramoto module
  • KuramotoNetwork
    • KuramotoNetwork.mean_field()
    • KuramotoNetwork.order_parameter()
    • KuramotoNetwork.update()
  • KuramotoOscillator
    • KuramotoOscillator.update()
• mercurial.core.neural_field module
  • MexicanHatKernel
    • MexicanHatKernel.__init__()
    • MexicanHatKernel.get_ft()
    • MexicanHatKernel.get_kernel()
  • NeuralField2D
    • NeuralField2D.__init__()
    • NeuralField2D.get_phase_field()
    • NeuralField2D.order_parameter()
    • NeuralField2D.step()
• mercurial.core.pattern_completion module
  • HopfieldPatternCompletion
    • HopfieldPatternCompletion.__init__()
    • HopfieldPatternCompletion.get_overlap()
    • HopfieldPatternCompletion.reset()
    • HopfieldPatternCompletion.sigmoid()
    • HopfieldPatternCompletion.step()
    • HopfieldPatternCompletion.store_patterns()
• mercurial.core.patterns module
  • Constraints
    • Constraints.equality
    • Constraints.evaluate()
    • Constraints.inequality
    • Constraints.violation_norm()
  • NeuralPattern
    • NeuralPattern.coherence()
    • NeuralPattern.evolve()
    • NeuralPattern.get_external_inputs()
    • NeuralPattern.information_content()
    • NeuralPattern.set_external_inputs()
  • Pattern
    • Pattern.coherence()
    • Pattern.complexity()
    • Pattern.free_energy()
    • Pattern.information_content()
    • Pattern.level()
    • Pattern.persistence_probability()
    • Pattern.simple_gaussian()
    • Pattern.update_impression()
  • StabilityRegime
    • StabilityRegime.attractor_basin
    • StabilityRegime.decay_rate
    • StabilityRegime.is_attractor()
    • StabilityRegime.lyapunov_exponents
    • StabilityRegime.resonance_threshold
• mercurial.core.plasticity module
  • PlasticJansenRit
    • PlasticJansenRit.derivative()
    • PlasticJansenRit.get_EEG()
    • PlasticJansenRit.sigmoid()
    • PlasticJansenRit.step()
  • PlasticWilsonCowan
    • PlasticWilsonCowan.__init__()
    • PlasticWilsonCowan.get_weights()
    • PlasticWilsonCowan.sigmoid()
    • PlasticWilsonCowan.step()
• mercurial.core.qft_propagation module
  • Dirac1D
    • Dirac1D.__init__()
    • Dirac1D.current()
    • Dirac1D.probability_density()
    • Dirac1D.step()
  • KleinGordon2D
    • KleinGordon2D.__init__()
    • KleinGordon2D.correlation()
    • KleinGordon2D.energy_density()
    • KleinGordon2D.laplacian()
    • KleinGordon2D.step()
• mercurial.core.sensory_transduction module
  • AuditoryTransductionPipeline
    • AuditoryTransductionPipeline.step()
  • BipolarCell
    • BipolarCell.step()
  • HairCell
    • HairCell.open_probability()
    • HairCell.step()
  • Photoreceptor
    • Photoreceptor.response()
    • Photoreceptor.step()
  • VisualTransductionPipeline
    • VisualTransductionPipeline.step()
• mercurial.core.state_space module
  • HilbertSpace
    • HilbertSpace.basis
    • HilbertSpace.dimension
    • HilbertSpace.distance()
    • HilbertSpace.inner_product()
    • HilbertSpace.norm()
  • StateVector
    • StateVector.copy()
    • StateVector.norm()
    • StateVector.normalize()
• mercurial.core.thermodynamics module
  • EffectiveTemperature
    • EffectiveTemperature.update()
  • FullFreeEnergy
    • FullFreeEnergy.__init__()
    • FullFreeEnergy.compute()
    • FullFreeEnergy.generalized_entropy()
  • InternalEnergy
    • InternalEnergy.constraint_energy()
    • InternalEnergy.kinetic_energy()
    • InternalEnergy.potential_energy()
    • InternalEnergy.total_energy()
• mercurial.core.wilson_cowan module
  • WilsonCowanPopulation
    • WilsonCowanPopulation.__init__()
    • WilsonCowanPopulation.clamped_derivative()
    • WilsonCowanPopulation.derivative()
    • WilsonCowanPopulation.evolve()
    • WilsonCowanPopulation.sigmoid()
    • WilsonCowanPopulation.steady_state()
    • WilsonCowanPopulation.step()

Module contents